Epigenomic landscape of zebrafish TEs

Genetic, epigenetic, and environmental mechanisms govern allele-specific gene expression

The Human Pangenome Project: a global resource to map genomic diversity

WashU Epigenome Browser update 2022

A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development

Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish

Common DNA methylation dynamics in endometriod adenocarcinoma and glioblastoma suggest universal epigenomic alterations in tumorigenesis

Human placental cytotrophoblast epigenome dynamics over gestation and alterations in placental disease

Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data

Epigenomic differences in the human and chimpanzee genomes are associated with structural variation

Tissue-specific usage of transposable element-derived promoters in mouse development

Exploring the coronavirus pandemic with the WashU Virus Genome Browser

Cellular diversity of the regenerating caudal fin

DeepH&M: Estimating single-CpG hydroxymethylation and methylation levels from enrichment and restriction enzyme sequencing methods

Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility

Co-opted transposons help perpetuate conserved higher-order chromosomal structures

The epigenomic landscape of transposable elements across normal human development and anatomy

WashU Epigenome Browser update 2019

Transposable elements drive widespread expression of oncogenes in human cancers

Cryptic transcription start sites encoded in long terminal repeats

Epigenomic landscape of nicotinic receptor genes

Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus

Epigenomic annotation of noncoding mutations identifies mutated pathways in primary liver cancer

Whole-Genome DNA Methylation Profiling Identifies Epigenetic Signatures of Uterine Carcinosarcoma

Evolution of Epigenetic Regulation in Vertebrate Genomes

Mapping of Variable DNA Methylation Across Multiple Cell Types

Integrative analysis of 111 reference human epigenomes

Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos

Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser

Intermediate DNA methylation is a conserved signature of genome regulation

DNA Methylation Signatures of Embryonic Surface Ectoderm and Human Skin Cells

Widespread contribution of transposable elements to the innovation of gene regulatory networks

WASHU EPIGENOME BROWSER

Hypomethylation marks enhancers within transposable elements

Jointly analyzing MeDIP-seq and MRE-seq data

Combining MeDIP-seq and MRE-seq to estimate single CpG methylation genome wide